PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.007G047800.1
Common NamePHAVU_007G047800g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family M-type_MADS
Protein Properties Length: 253aa    MW: 27977 Da    PI: 9.1948
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.007G047800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF68.65.8e-221865249
                        ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
              SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                        + + +sn qvtfskRr+g++KKA+EL++LC+a+va+++fs+  k++ +
  Phvul.007G047800.1 18 KMSKESNLQVTFSKRRTGLFKKASELCTLCAADVALVVFSPGEKVFSF 65
                        567899************************************999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006623.773969IPR002100Transcription factor, MADS-box
SMARTSM004321.7E-30968IPR002100Transcription factor, MADS-box
CDDcd002656.50E-341078No hitNo description
SuperFamilySSF554551.83E-261082IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-181131IPR002100Transcription factor, MADS-box
PfamPF003193.7E-231965IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-183146IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-184667IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MSSESKKSRG RQKIEMKKMS KESNLQVTFS KRRTGLFKKA SELCTLCAAD VALVVFSPGE  60
KVFSFGHPNV DAVIDSYLAR APSQDMGTMQ FIEAHRLANV RDLNAQLTQI NAQLEAGRQH  120
GEELNRMKKD SQAQLWWAQP IEKMSPTQVE QYKAALEELK KLVARLADRA MLQTATNQVC  180
QFLPGASSSS SSSNLLHHPH PPQVFPQPLI QPPMFQNFMF PDGSIVSHHG FNHVEMEGYA  240
PGPGPAPAGV FF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3mu6_A1e-141079170Myocyte-specific enhancer factor 2A
3mu6_B1e-141079170Myocyte-specific enhancer factor 2A
3mu6_C1e-141079170Myocyte-specific enhancer factor 2A
3mu6_D1e-141079170Myocyte-specific enhancer factor 2A
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007143148.10.0hypothetical protein PHAVU_007G047800g
SwissprotQ9FKK24e-59AGL62_ARATH; Agamous-like MADS-box protein AGL62
TrEMBLV7BBA20.0V7BBA2_PHAVU; Uncharacterized protein
STRINGGLYMA10G40080.11e-117(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.13e-59AGAMOUS-like 62